Scaffold Ga0208503_1003040

Overview

Basic Information

• Taxon OID: 3300025388
• Scaffold ID: Ga0208503_1003040
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2408
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014823	Metagenome / Metatranscriptome	259	N
F016116	Metagenome / Metatranscriptome	249	N
F021930	Metagenome / Metatranscriptome	216	N
F022867	Metagenome / Metatranscriptome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208503_10030401	F016116	N/A	LEEELVKQFPKEQFAETYIEMWQIYRDTNAIQIYNLIEAKYPGSHNDEKRARVWFEIATLFPHRLHELVKLLTEKWN
Ga0208503_10030402	F022867	N/A	MELDLQIREQLTSLASNYYNRFWMKSYILSCMVMENAAQNIQLGIIGGKGVTTILEYNIEISRQIDNLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHEVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLLH
Ga0208503_10030404	F021930	N/A	MSDQDLRRVTDLLKEVELEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKDTVDGIVEIEKSGNRPSFLAIAEKLAVQLSVIEHIISCQSLEQMGELMKIVTSEDYEEAREKIDLRFTK
Ga0208503_10030405	F014823	N/A	MSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYKQSRSEKEIENLQSTAVAEKKVDLPESLEVL