NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208503_1002441

Scaffold Ga0208503_1002441


Overview

Basic Information
Taxon OID3300025388 Open in IMG/M
Scaffold IDGa0208503_1002441 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2749
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029090Metagenome / Metatranscriptome189N
F032529Metagenome / Metatranscriptome179N
F036545Metagenome / Metatranscriptome169N
F104447Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208503_10024412F104447AGGAMTLTKTGYLCTTIHQLRLKNEFCDIINSIAVKKDFDSNARQYVRIHEILKEVKTINPDWRLTACAKYSWK
Ga0208503_10024413F029090N/AMKRKSKIVTFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKSKRPTWKLAYIAQDIEAFKQKANVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN
Ga0208503_10024414F032529N/AMTESRRLIDVTDAERARMRAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGDSEEQIRRRALAWEKLYEIRQVPVKESTSLKETSPEDTSCEVTSSTDTTSENEAKK
Ga0208503_10024417F036545GAGMTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSEFNLEQFKKLQERITFFKHLHPNWRLGSREVAEYSNCTCELCYQVRHPMKKDDLEEIKSLTIS
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