NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207956_1042940

Scaffold Ga0207956_1042940


Overview

Basic Information
Taxon OID3300025385 Open in IMG/M
Scaffold IDGa0207956_1042940 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028984Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0207956_10429401F028984AGGMSWLSWFFDDLFYWIAVIALVGGAAAYVLSYLVGFLPMLKPHALIMKVVGLVLVISGGYYVADHRGYERRVAEDKAEIERLNTEARAKEAELGQKLARATSQLKQAKNDIKTKQASIDARIDAGELRLPSTCGVQASSDASNGNQTDGTQSDRQA

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