Scaffold Ga0207956

Basic Information
Taxon OID	3300025385 Open in IMG/M
Scaffold ID	Ga0207956_1002094 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025385 Open in IMG/M

Scaffold ID

Ga0207956_1002094 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4228
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4228

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026196	Metagenome / Metatranscriptome	198	N
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N
F085118	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207956_10020942	F043229	N/A	MTQKGVKLEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTIIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDIIDHTIPWNSARNKLRYIDLCQTINKLKIIHPDWEMDLEDSKKHYLCKCYSCLEKEGQTSADTRRNYVRKIYPIQRK
Ga0207956_10020944	F040464	N/A	MDKKTRNYKNKVYTFKYKTMNPMVSPEWLRRGYAFVGQTQEHLKDILKELTLKMRTMTDKEIERDLRKGLKVTGDITLELSRFVRQGLEQKRTFKGLLGTLIETKNWALIKLILEVTEELKERSSSSSLLFSIAKEILRELQRIQAIIPIKELKQMETSLIDIQYWKLTRHLRI
Ga0207956_10020946	F026196	N/A	MWPTRMSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLGLWQRRDKLVEELIDLINATKVNKSEADSIKIQEYSKIQSIIEEQREIDPDWHLVIRQQGEGCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFVKELRRVEPNRLPCLREVSRNPSKESKA
Ga0207956_10020947	F085118	GAG	MNKCQLMDTILPGRVHLTMQFIDLINDLVHKKYENQYPAWAESIIEVTTQLINIDPRWELKTVLLTCGHVVLRNYDCTCDPPFFPLRVREKEFSRLRAKTITINDLIDKRNLLTRKLINTILERVVEESYSQYKLSWVSEVSKIIRQILNIDPGWELKCIKEQFKCLKIEHKVCKCGQQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207956_1002094

Overview

Ecosystem & Geography

Associated Families

Sequences