Basic Information | |
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Taxon OID | 3300025385 Open in IMG/M |
Scaffold ID | Ga0207956_1001700 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4865 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007918 | Metagenome / Metatranscriptome | 342 | Y |
F008991 | Metagenome / Metatranscriptome | 324 | N |
F014823 | Metagenome / Metatranscriptome | 259 | N |
F015440 | Metagenome / Metatranscriptome | 254 | N |
F015585 | Metagenome / Metatranscriptome | 253 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207956_10017001 | F014823 | N/A | KSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQSTAVAEKKVDLPESLEVL |
Ga0207956_10017002 | F007918 | AGAAG | MCDTTLEESDPFLNLEPDMEAGIKQELLSILTNVETLTEAMNRVILKEEGRREQFKILCSSIDYLFGENIGMIEKRKDDLKEIDPSLHAIDCKLSTRMERLRNVATKPDLESMKTEMEKVLSQQRIEKFQTNPQQEEQRPQKG |
Ga0207956_10017004 | F008991 | N/A | MHLTVKITEQVEKKLEAVLKGRYDNRTIWMYYKVSLQVLRDTIENLIACHHTTHPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDKLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLRSPMVIQFCEENGWAV |
Ga0207956_10017006 | F015440 | N/A | MEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRSEQWTQEMLKTHIFIVIQQEMDNILKVLNPKITEPLDKNQESNIRQEWTKVLSL |
Ga0207956_10017009 | F015585 | N/A | MTKIRLHLYSKRLCIKYRFVKLKEVKMSPKNTERNQRLIKVINHCSRIAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKRNSEVQGKPPSEVKAEPGLSEEEKFFSSPW |
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