Scaffold Ga0207956_1001055

Overview

Basic Information

• Taxon OID: 3300025385
• Scaffold ID: Ga0207956_1001055
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6569
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F039941	Metagenome / Metatranscriptome	162	N
F057095	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207956_10010551	F057095	N/A	TFHNEKCRILKSKDIVTLEKVSIANKLLIKTLSDETRSALKEQLALVSKVGSTFTNLSLMYTYIENNDSGLQLEAKSRQWSNEYQET
Ga0207956_10010553	F039941	N/A	MDIETLALRLEEIKLNRLEVLEEKKVLAEELLDGRLRIQLKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHACYRQQSS
Ga0207956_10010556	F017597	AGGA	MKKIFRSEKLLIKLAIKRKELIKIVKSSKSSLIKTEMITRILITALKAKQVISIRFQVNRTNNLKMWGQKS