Scaffold Ga0208218_1052154

Overview

Basic Information

• Taxon OID: 3300025384
• Scaffold ID: Ga0208218_1052154
• Source Dataset Name: Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 546
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Hot Lake, Oroville, Washington, USA
• Coordinates
  • Lat. (^o): 48.973481
  • Long. (^o): -119.476345
  • Depth (m): .35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101499	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208218_10521541	F101499	N/A	TIYQKLIKEQSPEFFCDSCGHYPIVPVHGHFVCPACKMPTKCCEGIPAEN