NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208250_1002894

Scaffold Ga0208250_1002894


Overview

Basic Information
Taxon OID3300025383 Open in IMG/M
Scaffold IDGa0208250_1002894 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3868
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037510Metagenome167N
F038926Metagenome164N

Sequences

Protein IDFamilyRBSSequence
Ga0208250_100289412F038926AGGAMRFWLYVIKAVWRFQMGRWYVWRDVPTNVVRRVAVLWYFDRKEEKNKLVYEAYKEYKLRKLKEKNT
Ga0208250_10028943F037510AGGGGGMIKLTYEHICDGCNKTLDTEVYECSDYPSTEFPKTHRMFSFHWQGLNAQLCKDCAKPLYEAQDRTMEIIIANRGQA

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