Scaffold Ga0208250_1000187

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000187
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21122
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053029	Metagenome	141	Y
F086508	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_10001872	F053029	AGGGGG	LQTINTNSQEKIQLEVFNNGVLAQADSLPTLSIYDADNDANPITGFSGLNAVDENPAGVYSFLLTPAITNINRTLEIRWSYTVNGVSTVQTDFYSIETPYSTVSETIDFLGFGSIPSQINYMDPKSIVSAEKVARTIIEGYTGIKFYTYYGAQEIYAIGGNTIQLTERMLRIDQIWENQILVYDGTQNPVYDTFGYNTEISPTGYQVRIWYPAWPDGWNNEMDPEIYEYGRFRDGYLYRFVGQVGYKYVPEDIKLASMLLIQDILSNDYNWRNKYLSKVNLSEISFEMGGGAFDGTGNIVVDNILDQYRKANIVII
Ga0208250_10001873	F086508	GAGG	MSFTELKIGELRKVADSFAIETQGLKSKQEIIAALEEEGITWQMYAKFDNAEKQDIEIPENEKKKRESKIMSKAANQILVKMERNNHSYQTMGFEFSQEHPFVAMSETDAQKIFDTQDGFRIATPREAQEYYA