Scaffold Ga0208250_1000180

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000180
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21537
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.13%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048689	Metagenome	147	N
F069616	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_10001801	F048689	N/A	MNERKIALTTEEWLQLPLSKRAPCKWYWPTGWYEAPFAMMINDWDNWEKHIKKEYPIQHWLRENFQYTFRHLYHTVKGLKHYIIKPHRKMRNAVFTSRYMDLVELVPHFHFQAIIEFVEVEKTFEVTDWSGEEVSEETVERGKKLKELYHYVKYERPFLLEKLNMAYERVEITDMTDETRYDRVEAIDKEIKDRDTELCIWVIQNRDLFW
Ga0208250_100018031	F069616	N/A	VKQSKFDIEVDLDFAPAANIAETEEASSAIITSDIGIVVVWPDFKKNSARAAVFKVGEAKRLEQEGFDREWIDEHGKVYGDLLPYNEKNVNILGYYLSHKL