Scaffold Ga0208250_1000152

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000152
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23444
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035607	Metagenome / Metatranscriptome	171	Y
F094805	Metagenome / Metatranscriptome	105	Y
F096502	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_100015220	F035607	AGGAG	MARTVSKSSDVGAESTPVPVVDLGGHFEEHKADPADRAAALQKRAPASFKDMQDIKTADWIENLMSGSTVFASDKGSFKLAGTGFHNSIQPIAEEIRKDPYLLRAVQRGRIAFITSEEAMEKIAELKDESSTSESHMDHLRESLAAGASENTGLYKIPLPDEAEPKGPSQSWEQIWNNSTSTAKPKNV
Ga0208250_100015221	F094805	AGGAG	MSDEIKNTVKPVVEAAAEPLGAIIPSGTVLSGTTIYNEPWFNVWAPQTFSGTVSGGYAQPTLSGNGWQGQNNTGLVFQNDQYNTTVRGF
Ga0208250_10001526	F096502	AGGAG	MEPRLNIKVAELFDKTAADANPDVNFMDPSQQWIGDFIDQDSNHFEKNMDAYMQQRQGLGDQIQRYVDEGMQGNDLSNPAQDRALMVMEPEVAGTQDLQLAPAKAASKLASQASGFRTNQAHPDFTLGLVANAKTGSLVNARVVAETPTTKIAGTVIAVGDAEFAVVWDDRTASVERKGDYELVIAQ