Scaffold Ga0208250_1000104

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000104
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29967
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (63.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F028168	Metagenome	192	Y
F064358	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_100010410	F019426	N/A	MYTRTGNRPCVFRKEIMRVIVFGTKDWMDYNDLMRQVTLLIEDNKHFYPDDKEYVFVHKGMQGAENMITEYIGKTERFLRQKGYKIKEELVRDKSSFSDVTMIESDVSIALVFGDSPRNRQCMKVMDAMEIPYRYFVK
Ga0208250_10001044	F064358	AGGA	MLCYSCSKQKDQLHPCQSAILEGVSLFMCQTCIDDKFEPRWVIILAGRQKGSEFVRDYIIKHRYVGRPISAEEIIA
Ga0208250_100010444	F028168	AGGA	MTEKPVIELISELTEFNDMKTYMSDPDLDYALDLIIKLIAKPDVPSSKIPDLIVKMQALSAKFAMMSRYYTTFEKGGENSKKKNVYYTAEEAIDKLVAALKYSMKGNY