NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208250_1000099

Scaffold Ga0208250_1000099


Overview

Basic Information
Taxon OID3300025383 Open in IMG/M
Scaffold IDGa0208250_1000099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31360
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (89.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011059Metagenome295Y
F066497Metagenome126N
F078138Metagenome116N
F083609Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208250_100009929F011059GAGMTKMTYDQWKSRYLTEEASNYDREFRFKFLSDYLLNPNLAAICRLHGVPYDTALTWKKRDWWHEMAEEILANHKDDLLAKQRAILEKTYQELGDRLHNGDEQYVPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQISHITIESLADKLRTITQQAIEVNPPSETIQQIEQTHQEPE
Ga0208250_100009943F066497GAGGMTEQEFKEWKTYHVTEEVFEHIRKAKSEAQDAWANRQFTTEADNQFALGGVYAINQILELEYADIAGV
Ga0208250_10000995F078138GGAMIPAMRNANAPHIDFGFLRGFIPSNPHFMPSNIDMVLERRGVFLFGEWKREDEEMKQGQKILLTALAWHHTVIIITGYVDDKPHIGLIQKVTPAGNLTLIGEGKDDLISFLTGWYVEVERGIL
Ga0208250_100009950F083609GGCGGMAKSITPLQILNDGYRNATLKIDGYVSGEDYTSYTVLDPSTLSQIDAQGTIPSKVRIKRINFDIEDGIQVDLIWDGATPTSLWRLTGRGEIKAGPFGGITDNAVTPTGKILLTTIGGGTTTISTSFTIILEIIKD
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