Scaffold Ga0208250_1000084

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000084
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33730
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (67.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037510	Metagenome	167	N
F053026	Metagenome	141	N
F058637	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_100008425	F053026	N/A	MKASLAVHLLIALGFDEHLFMKWQVGKNPSYTKKGPGRTHKQGKKNDI
Ga0208250_100008437	F037510	GGA	MIKLTYEHICDVCNKTLDTEVYECSDYPGMEFPKTHRMFSFHWQGLNAQLCKDCAKPLYEAQEQTMKIIIANRG
Ga0208250_100008461	F058637	AGGA	MSTESPIDLVKYGVLWQKVEDYEKKFDSMERKIDKLELSIEKLVSMADKSRGGFWVGMMVVSGLSSFIGFISHYVNLK