Scaffold Ga0208250_1000069

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000069
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36620
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (75.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F008414	Metagenome	333	Y
F017785	Metagenome	238	Y
F024945	Metagenome	203	Y
F086266	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_100006938	F001991	GGA	MALFSKNTITQVSGFDNPCIAGELVYGQKTFWNLVFSSNGAPVDLTGASIDAQIIRRNVSNLQDTRYGLSFDIADYVPEPAPVSLTITNRDDANGLFTLVIDETAWDVISTDPQLNISADNPVAFSGRIKVGFPAVGSNPAQDSIIFLLYLVRSDGVVN
Ga0208250_100006939	F024945	AGGA	MADLHDAIRALNSFVITIRGDIAYDKDEQVVQYDMAQAQAKLIELQTQEAQAEQAAKDAKASALDKLAKLGLTDAEINALIG
Ga0208250_100006941	F008414	N/A	MQSPQLPMKLMECMQHFTINKGIKMAQVIIFQNPNGGVSVCVPTGELPINEVLAKDCPAGAIIVDDSVLPTGSDAQFFDAWELADGKVTVNFAKAQAIKLAQYNSSAVNVAQKRQLNTLAGIENSVSDADFTAELTAGRTAISAAKTTAELVAIANPV
Ga0208250_100006946	F086266	N/A	MVRFANKFDFPVIHDLLRHFCRLHKFAILKDEATWSESHVNKQLSMVLAGAGFILIAEDGSGFLVALKAPCFFIENAFSLHEIIWHATNDKTSLRLFKRYIEIGEEMKKTGEIKEAHFSCFSESDFSRYGATKLQNTWKI
Ga0208250_100006947	F017785	N/A	MTTPITPIQNTNNIRYADFVRVVTPTATFRFSTAPTQMTIPAVDALPFDGLGVLVGIGKVQRDIKSTANQTTITLVGIDTALLGEVLGNNFKGAQITMWKGFFNPDGTLITSGGSGGLYQYFYGFINTFNIGEQWMEEVRMYVGTITVSAANIQMILQNRTVGRFTNDPSWQFFYPNDTSMNRVATISTVYYPFGKNG
Ga0208250_100006948	F000934	AGCAG	MANLTTILSIAEQVTINDQRFVGQTISRNQRISTSEIVTVVPFQFEMKPMNYLLYSQNRDLLANLRYFDKSMEQYLNFGSTGWENYINYRGDMTPTQVASCQWQTASANKVLVLGNLPSISSTAFIVKAGDFCQLDRYSYIATQDVLRGSGTTVNIPVHRTCLTTLVSPENAVIGQYGTTIAMGGNTYTGCTFPVILQQYPTYTLVPMTNDSFISWTGTFKAFESVL