Basic Information | |
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Taxon OID | 3300025383 Open in IMG/M |
Scaffold ID | Ga0208250_1000010 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 100324 |
Total Scaffold Genes | 155 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 121 (78.06%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F008806 | Metagenome | 327 | Y |
F009741 | Metagenome / Metatranscriptome | 313 | Y |
F014968 | Metagenome | 258 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208250_1000010124 | F008806 | AGGAGG | MTFLLSEDEALRNLLLGMKVTDQRSNASGDSTRNVGVWFGQPSQEIRDQNYPYITIDMVDISEDFSRAMRGLVKPTYLQDPTKLPDGTTDFNSDTNDWYIHEPIPVNIDYQVTTYAREPRHDREIIAQLMYTRLPLRFGVLQPNDNTVRRLDVLDVSKRDITEAGKRLFVNAFTVRISSEIVPELYTAVYKALEVNMTGYQDEVRGGTHPNFTPIHPITITS |
Ga0208250_100001032 | F014968 | AGG | MSKIVKLSKEEVRACADVALNRWMMKFGSVDRPNYAGDNKLKLEPEIAANVRSIVAEYAVAKLYKQAFTFPFYPNEEHPFRQDIADVGTNIEVKSIRTRDEIPVFPKDIRPGWLLVGARVLDRDYYSEVEVFGWIRMEDVQRDEWLYAPEGSWRIPLNQFSDDPIS |
Ga0208250_100001078 | F009741 | GGAG | MTQTFDGNYDYTKPWRAPVQPDQVAKRWSYNGPWSSNMERLTSQALMVMGIPGKDIQTMVRPPLPQIRLFPDRYGYGPSVQPGIEDVVSVDRNYHEPRVSWYSGSPAGYTGSSRNDLGTN |
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