Scaffold Ga0208250_1000002

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000002
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 183423
• Total Scaffold Genes: 289
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 196 (67.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020647	Metagenome / Metatranscriptome	222	Y
F052309	Metagenome	142	Y
F059640	Metagenome / Metatranscriptome	133	Y
F072912	Metagenome	120	Y
F081327	Metagenome / Metatranscriptome	114	Y
F098539	Metagenome	103	Y
F098630	Metagenome / Metatranscriptome	103	Y
F098647	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_1000002142	F098647	AGGA	MFNFKSVVDQAVTATKTPLTYVEDKAIRANLETLVDSYADFTKTVYETNLELAKQVVETVKTVDYTKFFTTK
Ga0208250_1000002160	F020647	AGGAG	MFETLVDQLVKVTLTNEPVKTEFYNGTLFVRTITETQARTVFHRLSETFGLGKVVVSPIGDTGEFAYDFI
Ga0208250_1000002186	F098539	AGGTGG	LTVTIRVPWTDPYNHGDAWNELLAWTVETYGLPGERVSFSPTERWMDFTFDDEQDALMFQLKTGGHRRTKQEYTVEFVNRIING
Ga0208250_1000002240	F072912	AGGA	MKRSIVILSLLLSACANTAAPVIPAWPTAPADLQRPAADLTPLTPDQRNLSDLISNSNDNYTQYYILKERYEGWQNWYNTQQKIWQGLQ
Ga0208250_1000002245	F052309	AGGA	MTLDDINTQLAALVNSGDPTFANAANYVAQATQAAQSGQMSPQELAETLKDLQRQMDIIQDMSQLQFKETLNTCINGLLIIAGAV
Ga0208250_100000226	F098630	N/A	MSEEKKSKNPFIAAAMAAKAAAANPRVPGARTAQVQNAKFGNQVSTNKPAKKSAGRGR
Ga0208250_1000002264	F081327	AGTAGG	LIELFQGTLEYIRRDFREYPLRFCAEVFSWACSVVSAVIFAATVPTVPVVPLYTIFISGCCAAAWTCWTRGSFGLLANYVFLITIDSIGLARMLFQ
Ga0208250_100000292	F059640	AGGA	MNALYSYLGYEYCPWDDVEEDNIKTYHECYKNGVRVKMPEAFYSTSPYELVPYDKFVEYVQTVEVFVQG