NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208871_1000107

Scaffold Ga0208871_1000107


Overview

Basic Information
Taxon OID3300025381 Open in IMG/M
Scaffold IDGa0208871_1000107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30873
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (84.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F102399Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208871_100010720F021233AGGAGVSNNFKRGLAPLETAPEPELGSNHDDRFSEMHEFAVRAFTWKTKQEDLALLDSIEQVVDQFMADYMRPAEVIIARFNTDKSMTVDEQDRLFLNLQSAITAIEEEVTRRYLKAQYAWYMLDDKYWAAWRKPSSGTQKDLEAVAKIETQSDRQFYFVQYAAWRMINDKVQSMKASQRYIQNQLYRRG
Ga0208871_100010722F102399AGGMTFLERTLASYQRNEIITPYIEEALIHADWPEEYPIRVYNKERKFDNMYHPSTDITKGEMHLYYKFHPELRAFYKEERISPTLQMTFQIGSALHSMMQSMLIHLGFTSEDSVEVRIRDEERMIAGAIDILELTMPNGERFLVDIKTCNKLPLEASHTYSMQLRVYQDVHPDAPERMALLFVEKSYPHRLRAIEVQPDPDELNKLYDKWSRVRVAIRNNDPSELKSCCNGPGTEEFTVCPAKSICERWSENDNTTKG
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