Scaffold Ga0208871_1000080

Overview

Basic Information

• Taxon OID: 3300025381
• Scaffold ID: Ga0208871_1000080
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33754
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (85.45%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y
F029972	Metagenome	186	Y
F037028	Metagenome	168	Y
F037031	Metagenome / Metatranscriptome	168	Y
F052345	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208871_100008021	F037028	AGGAG	MTEKKSFDGNPANYDDDSYDEVVEVKVIESKEELVASIDLVNASPRDLLLYFSDRFKEKHGYTYNIEWVKETSIFKSFKERYGVDAGPMIALLFDKHGGKLNDLVMTATAFSKGSKWIQDTLYIELQQQKLKEQNRNSTEGLMNTDDFIERFAF
Ga0208871_100008038	F029972	AGGA	MGLFQQKFSQRQERELEEQWPLAKRTVGSGNKWEKGDLSTQEQHMIEFVIEAKSTQAASFSITKKIWDTIKGHAQDRSWLARPILAIRLYGATEQPSTWGGTTSHTPDTLPVELDLICMDKDDFLELYYDYIRLKEKENE
Ga0208871_100008043	F021233	AGGA	MSFSKGINRGLEGLTEPELGVGHDDKFGELHEFAVRAFTWKTKPEDLAMLDTIERVVDEFMREYIDPAEVIIARFNTDKSMNDDEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKMETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQIYRRS
Ga0208871_100008044	F027396	AGAAG	MTEPAPKRKSRKQEVIQGKITWQVLERLLNHYWEWYEIYLTSGNPDLKLNNGVTVNIYDILKGIDRLPPRQKQAVVLSCLENRKEVEVARIMGFTKWSSQVGMYKRKALKTLCETVWKSEND
Ga0208871_100008046	F052345	AGG	MDRRTREFKDLAKLTPTTQELLSEEIDGELYLYSSSPNCKICSTSDELKNIIDSLLLFPKTYREVLQAIEPIQDKLGIEGKERINYENIRNHQKKHLPFEKRLVREIVEKRAREKNRSILDAGDRLLTAEAFYEIIVAKGFEGIALGYDKPTLTQTMHAMDMLSKLEKEGQDDYRPEELVNQLDMILMAIREVLPDSMKEALFNRIEEYQNGTSKKAKKPRAIELEAEYIDEDLEDDL
Ga0208871_100008050	F037031	N/A	MAITDPNQIGGIRPEDVKQTPEQIAQVNAYLAQQKAEEEALGKEQPIELMESELMGVWKLLQELQYKYGNRKGSFENLTSLRNEADEKFAALGFQVIVDWVMPGLMQANGQNRPEPPTITIVGRLDGSEYNPEQNRYETGMGVADDYYNAKRKALGMSNKKLILPGQ