Scaffold Ga0208871_1000067

Overview

Basic Information

• Taxon OID: 3300025381
• Scaffold ID: Ga0208871_1000067
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35827
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (93.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y
F029972	Metagenome	186	Y
F037031	Metagenome / Metatranscriptome	168	Y
F052345	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208871_100006717	F029972	GAG	VSKHTQKMSQRHEKDIEEEWPESHRTIGSGNKWEKGDLSTDESNNISFSIECKSTQRNSYVITKKIWNNIKSHAQNRSWLARPVLAIRFYGSTIEATEWGERENTADTLPVELDLVVLDKNDFLELYYDYRRLKENERGI
Ga0208871_100006730	F021233	GGA	MNSQSRFRRGLEGQPEPELDKPHDDKFGDLHRFVVRAFRWEAKPEEAEMLDAIEAVVEDFIQEYIDPAEVIIARFNSDSNISPSEADRLFLNLQSAIVAIESEVTRRYLKAQFSYYLLDDKYQNAYVKPSSGTSPDRNARARLDTRDDRYFYFVNYSAWRIINDKVNSLKATQKYIQNQLYRNSYGR
Ga0208871_100006731	F027396	GGA	MEDSAPKKRKSRVQEVVRGEMSWQILERLLNNYWEWREVLLTTGNAELHLPNGITVNIYDILEGIDKLPLRQRQAVVLSCLKNYKEVDVARMMGFTKWSAQVGSYKRKALKTIADKINEVNKIENRAINDK
Ga0208871_100006733	F052345	AGGA	MDRRTRSFKDLAKITPTTAELLSEEIDGEVFLYKYSPNCKICNTSDELKNIIDSLLLFPKTYKEVLQAIQPLQDKLDIPEKERINYDNIRNHQKNHLPFEKKLVRDIVERRAREKNRSILDTSERLLTAEAFYEVILAKGFEDLASGYGRPTLTQTMHAMEMLREIEKEGQDSYRPEDLINQLDVILLAIRETIPADLKEALFKKIEEYQNSGGNLGKNTVKKPTPELEYIDPDLEEES
Ga0208871_100006737	F037031	AGAAG	MTTDPNQLQGIRPEDVKVTPQQQAQINAYLAQQKREEEELGKEQPIELMESELMGVWKLLQELQYKYGNRKGSYHNLISLKNEADEKFAKLGFQVVVDWVMPGISVTPQPPTITIVGRVDGSEFNPEQNRYETGAGVADKYYEAKRKALGMSNKKLILPGM