NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208738_1016098

Scaffold Ga0208738_1016098


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1016098 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1225
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F010534Metagenome / Metatranscriptome302N
F014823Metagenome / Metatranscriptome259N

Sequences

Protein IDFamilyRBSSequence
Ga0208738_10160981F014823N/AYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPDLEQMRTLIEDIYDWKVYRQSRSEKEIENLQSTAVAEKKVDLSESLEVL
Ga0208738_10160982F007918AGAAGMCDTTLEKSDPFLNLEPDIEAGIKQELLSILTNVETLTEAMNRVILKEEGRREQFKILCSSIDYLFGENIGMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKTEMRRVLSQQRIEKLQTNPQQEEQRPQKG
Ga0208738_10160983F010534AGAAGGMSDKVGEKQEAIMNLIDQQIKGALKDQASRLEILQDRIKDAMDIGTTEHSQGIKQVMLFVTKAHVQAWITSLKHQIDIAGDCEICDLEKILGEESLEIAEAVKVALSNRNEETRSRVLR
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