Scaffold Ga0208738_1002386

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1002386
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3904
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013757	Metagenome / Metatranscriptome	268	Y
F036063	Metagenome	170	Y
F062427	Metagenome	130	Y
F071946	Metagenome / Metatranscriptome	121	Y
F083613	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_10023864	F036063	AGGA	MRKLTPAHKLQINMLVLKTTQDYIDFSTTQHGVNRPITVDNLQFHTLDIQYNINALAAFNTDNNVQKLHDSIMQQDTFVREYYIEVLQYIESNNLIPSNAFCCI
Ga0208738_10023865	F013757	AGGAG	MFNTLAHAKLVYNKKVQAYKLVVAFNAHKQIKKIGNTEVVKYAFPTQAKCAYVSGDLLAENLQEELAKVLPHAVNTIRSNNIVFVD
Ga0208738_10023866	F062427	AGGAG	MSKALVKRINKAFGKIYDMGDSGLDYLDGHVALDAALMQHFYDETLDTLSKEMLETLAVQLETVVEDAEFDLDV
Ga0208738_10023867	F071946	AGGAG	MSGIYDVVQNPIPKTGLFATPESLDQLMEYCQRFNGQERIIAITCATMALNLAHELVEDRILSKEVFCG
Ga0208738_10023869	F083613	AGGAG	VGYFTDCDFDSTLDMIDCVNEVVERHVRKMERCTPIELGLDVRCGPVYIDRNEEVIAVTHSSAIDYYGGFEYINEGEGRVTCGSYTFFNTESSRVQDCFDHLNEVVDEEVEE