Basic Information | |
---|---|
Taxon OID | 3300025379 Open in IMG/M |
Scaffold ID | Ga0208738_1000967 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6838 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (26.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010516 | Metagenome | 302 | Y |
F021219 | Metagenome | 219 | N |
F071820 | Metagenome | 121 | N |
F086514 | Metagenome | 110 | N |
F088001 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208738_10009671 | F088001 | N/A | MEEAMKPDIVKEIIQLCVFVPCFLIIAWAISDYRAYKKELRENREWLDRYLAGKSKTNPTIKRK |
Ga0208738_100096710 | F010516 | N/A | MSQDPYAVWVPSNTGRYLLTFATLDEAYLFIIRFGGGLEVVPNTYENF |
Ga0208738_10009673 | F021219 | GAGG | MKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNRPWDTNNLYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVAEQEIEELEWQRYLREKRGHDKYYEEAPV |
Ga0208738_10009674 | F086514 | AGG | MMINPLNAICVQSGIPNSNLQQESIDEPIVAARLHEMDIKEYLKEMGRKGGKARAAKLTPEEKTRIALQGVFMKQYLKNLKKKST |
Ga0208738_10009676 | F071820 | N/A | MSQQRSKATSWASLLQNEIKATEKKPVGKGWKTAKELQREFKVGERKLYDILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA |
⦗Top⦘ |