Scaffold Ga0208738_1000953

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208738_1000953

Scaffold Ga0208738_1000953

Overview

Basic Information
Taxon OID	3300025379 Open in IMG/M
Scaffold ID	Ga0208738_1000953 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6903
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042304	Metagenome / Metatranscriptome	158	Y
F055534	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100095314	F042304	AGGA	MSKLIATYRKVPSPTNRKKLEVYLVKHMMALCLAAPEEVEFLKAHQFI
Ga0208738_100095319	F055534	AGGAG	MRNNYNHEELEAARILDLVRMGDDSVPWTAITWALWVLGDAVGH

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