NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208738_1000716

Scaffold Ga0208738_1000716


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000716 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8296
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F024559Metagenome / Metatranscriptome205Y
F033308Metagenome177Y
F063276Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208738_100071610F063276AGGAMQNSTVRQNLDGILVLILASCAIAFAIWWNLEHPHLVVRYDCSIAEISPDYPPAVKEGCRKLRAENILQKPK
Ga0208738_100071613F024559GGAGGMTSALIKLIFGLFLIAVAVIFGPLLGIWSLNTLFPVLAIPYTLETWAAFGLLFGSATGLSFGSKK
Ga0208738_100071615F009462AGGAGMELHESVRDTFKTMVIKEHEGFRLTLNKHEVLAPKGLFSIDMVQESLKDGDVIDSQTYSFFMDKEELQALAYGLTA
Ga0208738_10007166F033308AGGAMTNAKQVFDELFYRMKTTDLNKFEIKREVGPNWLPNGTIPFDLTAKNGIATFEVWAESIQDAEDQVSQFLERDNDGQD

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