NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208738_1000172

Scaffold Ga0208738_1000172


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000172 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20246
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029343Metagenome188Y
F091426Metagenome / Metatranscriptome107Y
F096675Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208738_100017217F029343GAGMEDYTLEEVTQTGPRQITTYELARWAALIEAVDLIAEKCEDRSIDFYSPEGMKYIKPLDIQDYVDNRTDTLVMKIQTARGIEKNLINIKNLQIENKLRRLEIKE
Ga0208738_100017219F091426GGAGLRTVSKRKTDKILSEASYESGNTYTGALPSTSTPETKDSYVTNDSPPTLEKLANLKNNGQGGPNPEALPYPLQDSVVQLANLYLQTLDLKNKAATAANLPLFKGKEKDLKKFRAKLAGIMIAYKELAAQLNSFTLAPK
Ga0208738_100017226F096675N/AMELKLVKKDFADNFLSVIGKAIDIVSIKLNKDGLYAVCNKPDTSIILLAKYNKSFNVDQEITLNIGDVKKLLRVIDCIDEDELVFTIESNHLYYKTDKLQFKYHFLDDSVVPKVTLKREKIEALTNDTYFDINTKKLQEILKASSFTTDTNKIYLYGQSDGVYCELGDKEKANTDNISLKVTDKVEGQPFNQVIPFNLDIFRILTGVKFETARVGINLKFKVMSFYVKPTDETDFTFVISGLVK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.