Scaffold Ga0208738_1000146

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000146
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21809
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (70.69%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F008554	Metagenome	331	Y
F023104	Metagenome	211	Y
F046749	Metagenome	150	N
F050811	Metagenome	144	N
F082065	Metagenome / Metatranscriptome	113	Y
F098538	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100014612	F001008	N/A	MSKEKHMPKLWIDGETADRITLATLTDYRKYLKSELKKWKDNPKTDTNTDGYWLHPDDVSGNIRRIEALNLIIKDYTI
Ga0208738_100014619	F008554	N/A	MNIEDDIADKLGNDLAREVDREILWGMLQGLGWTRVMIPKFIDNHHAIDITYWLEANCKKAYERSGRDFLFEDVKDANWFKLRWSTE
Ga0208738_100014628	F046749	GGAG	MQDSNQHFYNQMEMHVRDSNRTLRRLRRPPLPQINAWDVTMSDDVLYQQVYAEEVPCVEIFMPKDRLETIINYIKYAEDEIDKHDTDKKLIARYEHDRVVRLNNPAVEKAYQHYCTLLELCRT
Ga0208738_100014629	F050811	GGA	MMPLHANLLLDHEYTIVEINDRTLVHDWLVESFGNPGTRWFYNGNKIYFRDERDWMWFELRT
Ga0208738_100014654	F082065	AGGA	MKRLLLIAVLTLSGCSTLSDLKDQIPSFWDGNQSVVVTDMQQIARHIDCTGDVKPQLHDLFMKVEWYDLYANTKGTKDMAKLDVVMLNTIKEFQDRVAQGPVSPLYCDMKKKVLIQQADIIATTVQGRF
Ga0208738_100014655	F098538	GGAG	MSDQLQQVAQSGDQWAAERANYAIQVHGAVGAGQLSASEAKEILQDMINTQQLQEQANADHVKAALFFGIMELISLYG
Ga0208738_10001469	F023104	GAG	MNILNLRFEFTNPFDRWDYFKNLGCLQGDMGMYKAWELEHTYYSPLLLDCELSLIHRCDHPGFEIGIGILGYGIHFRIYDTRHWNYDLNCYEERDYSEYFEINH