NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208738_1000138

Scaffold Ga0208738_1000138


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000138 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22455
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (75.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008554Metagenome331Y
F019784Metagenome227Y
F050811Metagenome144N
F063289Metagenome129Y
F082065Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0208738_10001381F008554N/ADIADKLGNDLAREVDREILWGMLQGLGWTRVMIPKFIDNHHAIDITYWLEENCKKAYERSGRDFLFEDTKDANWFKLRWGTE
Ga0208738_100013810F019784AGGAGMIRLSIQELDKIKEICNEAEVEYFELNQDNRSGIGSILTLTYDTFVADYPAKMTVEVSGAETW
Ga0208738_100013830F082065AGCAGGMKRLLLIALLALSGCSTLSDLKDQIPSFWDGNQSVVVTDMQQLTRHIDCTTDLKPQLHDLFMRVEWYDLYANTKGTKDMAKLDQVMLTTIKEFQDRASAGPISPMYCDMKKKILIQQADIIAQTVQGRF
Ga0208738_10001384F050811GGAGMIPLHNDLVLNHEYHVVEVNDRTLIHNWLVETFGRPGQRWFCNGNKIYFRDEKDWMWFELRT
Ga0208738_10001385F063289GAGMMAVTQERFEMQTAQQLKQEGWIHDITDLSVTECQDRANWCREAFGSMFDDITWTGKWYGAQLPFQTGSIVPNRQFVFMFRDDKLYTMYKLMWPR
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