NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208738_1000056

Scaffold Ga0208738_1000056


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000056 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34502
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (83.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036080Metagenome / Metatranscriptome170Y
F043202Metagenome156Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208738_100005619F036080GAGGMNNQIDLESAIMVAWQTSEDIDLLYKHHGDAPRPMTEDEVATALLGIKALHDMRMEKLMDTYYRKMELDQYCTDPVKLAAREAMFPIKKKGKK
Ga0208738_100005622F058556AGGAMSTFIVEHEYKGYPIFETISGVEDIDTSLFDKILTMWVCDSPEEIAAVENELRKKHARSSQPA
Ga0208738_100005626F043202GGAVTKNSEQQSLLADKPYYVADTGHFGITIKVCFSDAAFQQALKDSKITAKHNSLDLGLAESHYIQQEGTQFAMMAIVFNYEDMAKLDALERMGIIYHEVSHTTTHVFEYIGEDESKIGDESRSYLGEHIFKQVFSIYATEDEKRANSRKRNRTASNETSEKVLGALLQMAELNNGSAGPDSVSEPKSVPRRTKNSNGGTKSKTSARVRRAG

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