Scaffold Ga0208738_1000056

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000056
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34502
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (83.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036080	Metagenome / Metatranscriptome	170	Y
F043202	Metagenome	156	Y
F058556	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100005619	F036080	GAGG	MNNQIDLESAIMVAWQTSEDIDLLYKHHGDAPRPMTEDEVATALLGIKALHDMRMEKLMDTYYRKMELDQYCTDPVKLAAREAMFPIKKKGKK
Ga0208738_100005622	F058556	AGGA	MSTFIVEHEYKGYPIFETISGVEDIDTSLFDKILTMWVCDSPEEIAAVENELRKKHARSSQPA
Ga0208738_100005626	F043202	GGA	VTKNSEQQSLLADKPYYVADTGHFGITIKVCFSDAAFQQALKDSKITAKHNSLDLGLAESHYIQQEGTQFAMMAIVFNYEDMAKLDALERMGIIYHEVSHTTTHVFEYIGEDESKIGDESRSYLGEHIFKQVFSIYATEDEKRANSRKRNRTASNETSEKVLGALLQMAELNNGSAGPDSVSEPKSVPRRTKNSNGGTKSKTSARVRRAG