Basic Information | |
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Taxon OID | 3300025379 Open in IMG/M |
Scaffold ID | Ga0208738_1000056 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34502 |
Total Scaffold Genes | 59 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (83.05%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036080 | Metagenome / Metatranscriptome | 170 | Y |
F043202 | Metagenome | 156 | Y |
F058556 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208738_100005619 | F036080 | GAGG | MNNQIDLESAIMVAWQTSEDIDLLYKHHGDAPRPMTEDEVATALLGIKALHDMRMEKLMDTYYRKMELDQYCTDPVKLAAREAMFPIKKKGKK |
Ga0208738_100005622 | F058556 | AGGA | MSTFIVEHEYKGYPIFETISGVEDIDTSLFDKILTMWVCDSPEEIAAVENELRKKHARSSQPA |
Ga0208738_100005626 | F043202 | GGA | VTKNSEQQSLLADKPYYVADTGHFGITIKVCFSDAAFQQALKDSKITAKHNSLDLGLAESHYIQQEGTQFAMMAIVFNYEDMAKLDALERMGIIYHEVSHTTTHVFEYIGEDESKIGDESRSYLGEHIFKQVFSIYATEDEKRANSRKRNRTASNETSEKVLGALLQMAELNNGSAGPDSVSEPKSVPRRTKNSNGGTKSKTSARVRRAG |
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