Scaffold Ga0208738_1000031

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000031
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45478
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (83.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034010	Metagenome	175	Y
F049367	Metagenome	146	N
F050812	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100003136	F050812	GGAG	MAWSSHAISQMQGEKQMNEVLMSGFGVSNKGFGLSVNTTHDGSTITFTSGDIIKDILTDPIITNNGKSVGERNIEWLHEKLDEWIKKQLELDK
Ga0208738_10000314	F049367	GGA	MALKLNLSSTQFGAAAPEAYARVTNFFGNKDNIQVQVSVHYNEDARHGNMSPVMEHAHYIGLADLAGKGELMTAIYTVLKTMAQYQGATDV
Ga0208738_100003140	F034010	GGA	MTRKEIWEDFIAPIGGATLFVILFGIVIGLILLLLLFCALSAVFSPTPEQKAELNKPRIVSKFEDCEIWIFQNTHYVTRCGNHTVTERHYSEYCGKGCTRQKVERIEND