Scaffold Ga0208738_1000016

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000016
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56561
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001201	Metagenome / Metatranscriptome	749	Y
F009449	Metagenome / Metatranscriptome	317	Y
F017776	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100001627	F001201	N/A	MYKEGRQIVTDIAHEVDGVVKDVKTVQKKAKGLLGFLSAVFGKKEELQSTADVAPVKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNSLKNYVKEQEEFALHANNDEGQEAAIKITIANLQMEKLNQELSDYMIYHVPNELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWQRRQKADLIRGRMVASAITVLMLMWIWLMIISLTHSPSY
Ga0208738_100001628	F017776	AGG	MEKITLSTQLVNQIMAYLGTRPFQEVFQLIEAVQKEAQAQQQPAAE
Ga0208738_100001640	F009449	GGAG	MAKHDDIKEDKKLIKKAFAMHDKQEHTGKHTNLSKLKKGGLAGVSGESMKAVGRNMARAMNQRGRGG