Scaffold Ga0208738_1000005

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000005
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78555
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (85.60%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026474	Metagenome / Metatranscriptome	197	Y
F053696	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100000555	F026474	GGAG	MHIWLAVAFYSGIGCVCMVARDVLNTVLTKAIAEGHAKLAGNMDGLSDIVNIVLASFSGVQLIHLGWRGWLGILPIGIIGKYTTEHATKWSHKNVVEEK
Ga0208738_100000557	F053696	GGA	MAIVDSVDEDGTIWCIQMARRCERVKIQDVAPGGHVKIIPCPNDVNRAEAVAYANRQLGTKYGVLTIVSIAINIMLPDFFRFDIRRADTLICSALVARSWEHGSWDCPVDPFDVTPAEFDGILGGGGVQIY