Scaffold Ga0208738

Basic Information
Taxon OID	3300025379 Open in IMG/M
Scaffold ID	Ga0208738_1000004 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025379 Open in IMG/M

Scaffold ID

Ga0208738_1000004 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	86649
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (67.07%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

86649

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (67.07%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F011665	Metagenome / Metatranscriptome	288	Y
F020170	Metagenome / Metatranscriptome	225	Y
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F063276	Metagenome	129	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100000423	F009462	N/A	MLWANTEHLKQLKEMTMELHESVKDTYKEMIIKEHEGFRLVLKKHEVLAPKGLFSINLEQQTLKDGEITDTATYNYFMTTEELQALAYGLTA
Ga0208738_100000425	F026556	GGAG	MTSALIKLLIGIAFIIIALAIGPIIGIWSLNTLFPQYLNIPLTWQTWLAFNILFGSSVAGKFRK
Ga0208738_100000427	F070810	AGAAG	MKENFKITIPWHNQDNNWWNDTCADVVEVFGLPGERYTYHPRYEDMAFYFNSKKDYELCKILLSDRI
Ga0208738_100000428	F063276	AGGA	MQDSTFRQNLDFYSVLLLGILLVVFAVYYNYTHPHVVVKYDCSIAEISPDYPIPVKEACRKLRAENILNKPK
Ga0208738_100000431	F033308	GGAGG	MTNAKQLTDELIYRMKTTDLNKFEIKREVGPNWLPNGTVPFNISASKGIATFTVWAESIQDAEDQVSQYLERDEDE
Ga0208738_100000438	F011665	AGG	MSNQINLSPITQFIQQLRAAELSQSKEVKIPIQQARLLSLALNEIQDKLVQDYENLYNSLKTSTDNEVVSVMLDGGDFKS
Ga0208738_100000472	F020170	AGAAG	MSKHVDPVNYQNEESHEQLMAAFREYFKANQDWQSKGTRVAGERMRYWLAQIRIIAKDRRTHVQQYRVYLDQAKLARKTNQKAGGSRDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208738_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences