Scaffold Ga0208738_1000001

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000001
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156630
• Total Scaffold Genes: 164
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (73.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F009462	Metagenome / Metatranscriptome	317	Y
F028806	Metagenome	190	Y
F036696	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100000114	F036696	AGGAG	MSKALNKRIADAFATIYDQGDNGLEYMDGHTALDPALMEHFYNDTVETLSKADRTRMALMLETIASDMDMDLEC
Ga0208738_1000001150	F009462	AGGAG	MLHDSIKNTYKEMVIKEDSGFRLVLKKHEVLSPKGLFSVNLEQQNLRDGEISDVSTYNFFMTKEEIQALAHGLTHE
Ga0208738_1000001162	F028806	AGAAG	VLTVNKFTDFPEQPRVMRDAEGEAYFSIMLAQIADFNPNEIIAVARSGFSYAMWVAQMLKLPLGAYWAERGELVTGSDPERIVFVDDNIVSGSTYKDTKLFMERYYPNTEWRWAVLFTDWHTPKEICDEVIQGVKLPYFAEEPMWGSKKISQDYGIRYRDE
Ga0208738_100000127	F000652	AGGAGG	MKTVRVQTVLTQELEVPDEWDKLAVFDFLAEYQSFRTAFQGISDVDQTARIVDLVVVEERVTEMGEEAYDD