Scaffold Ga0209740_1000191

Overview

Basic Information

• Taxon OID: 3300025374
• Scaffold ID: Ga0209740_1000191
• Source Dataset Name: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10969
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Conch Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F075483	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209740_100019110	F075483	AGAAG	MIELLAVQAITNLALAAVVIKLRRELWPMIAGAGSEDVGFWVRSSSVLLVETPLLKAAKTAIRIRWLFSEELHLIHRLRVYDVAMRPSSRVFYKEWRAWMQGDDRYRCKVEKPRGLSKLYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKRWTKPEPSGSAPP
Ga0209740_10001919	F013155	GGAG	VIIVAIALANLAVTVWLLRLLIPIWQTLRKVVFALDNFDFDEISRKFLNNEKPLAENVIVKTSEKKEEGYREISITRVYKKPLDAKEVWEGIVRQMAEKLQ