Scaffold Ga0209143_1000976

Overview

Basic Information

• Taxon OID: 3300025373
• Scaffold ID: Ga0209143_1000976
• Source Dataset Name: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13575
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209143_100097611	F100012	AGGAGG	MDREKVLQALKKAQGEYDIKDLDRFVREAWEEGDVLYAEIVAELTERAIEILFDQHFLWVHIVESEDFEEWIPDGWYSFVAVHPETGQCLTFLKDPVHSGKSRSSFRARIRSADDAVDAVTRLAELIEQNLKSRAVE
Ga0209143_100097612	F069506	GGAGG	MQLEQSTYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWDEPDFPNDIPEIIIRAVEKLIGKSLAWYCELVRDPSGFTGEYSFIVVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIIRLVIKLLNQIQPELVTA
Ga0209143_100097613	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVEALTDRNFGWHEDALKDEWSYTGEFSFICVDPETFKCLTAERSNSSCTVSVVFPILSIDDAVQVVEYFLQLVQQA
Ga0209143_100097616	F104114	AGGAGG	MERLRLWLSLTQDEKFAAAEKELKNATLDIHEDFEEEWSLSRSVEDFAPDGLAELISWAAECLLGLQWQLEWDFDADVEDMFLSKGTTTYWFRVFDPETGCILTRNPNGIPGERFRYCKFIETLGDAVQAAVDLADIIAENLPVVRSQVSSREVK
Ga0209143_10009763	F092976	GGAGG	MTVQEILHWKQELRRVLQEFLQVWQKCPKCGAKWADISWDAESDHEFLLVECRSGHLFRADEQFWLFDYDDSGVYVPSEETAMTEVSGYAG
Ga0209143_10009768	F088087	GGTGG	MKASDGSVWLPVTVSSAPCEICKRKSKSVVYECVEGKWVGVRVVACPEHAEKAIEQFIAGGDE
Ga0209143_10009769	F080678	GGAGG	MFVRKVDAKTPIEEVYDNWERIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSYNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI