Scaffold Ga0207957_1000384

Overview

Basic Information

• Taxon OID: 3300025372
• Scaffold ID: Ga0207957_1000384
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10295
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038092	Metagenome	166	Y
F055733	Metagenome / Metatranscriptome	138	Y
F092047	Metagenome / Metatranscriptome	107	N
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207957_100038410	F103248	GAG	MLTIKNIDTIVNVGSSINNWRIGAVTELEYLYAFSVLIGSMVTTFYLNRESTYVSGRNEPVYRLYKDFEQSKINRWVSLHQIEPYMIGELIDKMLNE
Ga0207957_100038413	F038092	N/A	MAHIPTPPTMTTQQMLQKIQNIAGTPQSVYTQAMLDAQQIKDIALEQAQRVLDEYIKQENEKRKQMFLTIENIDKIKGHDYSEWLKVIGVKEWETHYEFTLGNKEMSQIETILLHRRQTSDKRYIMEYNGNTLWISKDRLSSIEEIIECMHEI
Ga0207957_100038417	F055733	N/A	MAPIVYMVQTMLWIAHKDMNRADEISKKVSRVEEVNGLKYIVIEN
Ga0207957_10003842	F092047	N/A	MLTIKNFTNIEGQEFKLSSGQKFIIGIAKNEGLHYTFGVFPLLENNVASIKDVIVYKLHRALLNRRGYVMTSENLQQDVYVKLSNLTLKNFILELHIQTGMICS