Scaffold Ga0207957_1000296

Overview

Basic Information

• Taxon OID: 3300025372
• Scaffold ID: Ga0207957_1000296
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12076
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F010836	Metagenome / Metatranscriptome	298	Y
F011075	Metagenome / Metatranscriptome	295	Y
F011392	Metagenome / Metatranscriptome	291	Y
F018718	Metagenome / Metatranscriptome	233	Y
F029655	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207957_100029616	F005630	N/A	MNLYEVNGFYGTRNRGTILVYETRSGKRWYCVEGSCNINCTYDEINEGCNVETISDIDTMSSKDGIYSVNDLYDFVTN
Ga0207957_100029618	F011392	N/A	MNLSIKEINELIYSLGITASKGMMCDKELNVSLLDKLQCELNYRIGLEAIDEEIEVSSHYVSNEEADEDAMNYGIGVIKASEELKKFDDYCTLKQNETSVIDDYRIHLRKLKTPGYASQAILDFVDKKGAASYSEIQSYYRSITGSNSFSHILKNLRIPYKNRKTQRYLAKEGKDYSNAKYVIKVANPSNWVVKDSEAEEIEAKLRSEEARKKLWGDK
Ga0207957_100029619	F018718	N/A	MITVKEWYISNYPTDDMGEGINPKATFVGLLNELFVGRDVYEYLYVYDSIIRERLFQKLADELGFGYEYVHKLWYNI
Ga0207957_100029620	F029655	N/A	MNKLVFSVNEENCTNFLKKYPSIAYLMLTSKYKCKTMLSAYKNFLKVKDMNESKLGGNAETISSPTFGTKTFYKYDWCGCGGFAEVFQFVYNKNKNK
Ga0207957_100029629	F007751	N/A	MNLVSDLKSVIGKEVSQNQSPTCRARLVSVGKSNSIFESVVSPYDKFPKKELVGVRYKIPNWIAWNSFFY
Ga0207957_100029630	F010836	N/A	MATSNFHNENASAIFAVRLENEYDYEDLVDNLKSELSNNPDYVDYGKTDKHELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYEGVNLDWNVDYSINGDAQYDNNDFYIEDIAWYGKLSKSAATKYAKLAEKKAEKLKNEIVEKLEALYDDYSEKYGVTAVFSNGETIYHKL
Ga0207957_100029632	F011075	N/A	MSSFERHLGIVVGSHLNDAMIEVSINPQLAKQRMKFIKALTFFNENLQSSVTDDYLNWLWIELDNGKWGAPYVKGTNYETK
Ga0207957_100029634	F010084	N/A	METDITEEVLYHLSKNIKTKIGVSPINGVGVFAIKDIPKGDRVFPAWEYDSGIYLIPNDKLHLIPKEVFELLDAYFINDECGFKVIRLYKGLNFLFHGFSFCNSAWPDRERQNLSDRGFALRDIKAGEEILEWYTENINLVDSK