Scaffold Ga0207957_1000020

Overview

Basic Information

• Taxon OID: 3300025372
• Scaffold ID: Ga0207957_1000020
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40136
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (38.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010516	Metagenome	302	Y
F021219	Metagenome	219	N
F027088	Metagenome / Metatranscriptome	195	N
F060487	Metagenome	132	N
F086514	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207957_100002018	F021219	GAGG	MKTDPTLDVTPVNVAIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNRPWDTENTYSCSLDTFHVGWIHPESEKAKANEMGLSLEDYRAFVAEQEIEELEWQRYLREKRGHDKYYEEAPV
Ga0207957_100002019	F086514	AGG	MLINPLSSIYTQSGIPNSNLQQESIDESIVAARLHEMDIKEYMRELGRKGGKARAAKLTPEERTRSALYAVSMREYLKELKKKKTS
Ga0207957_10000202	F027088	N/A	MKKLLILALLALPLVSKAQLVQSPEYSWRVQICDLTYNNNQQLTACPVTVFYQSTITNGGAFVSNVQSVPQTLSVDLVAQAASTVVYNGTTYTYGQALGIMNAIFAQERTAELANAAKASSVSAPQTTQNLSPVVTTNNTK
Ga0207957_100002022	F060487	N/A	MMKNKRTPSKVSQVKELQAQIKHLQMIVASRELDVEILEEQIATMEHRSLWNRIKRLFSLRDTTL
Ga0207957_100002026	F010516	N/A	MNQDPYAVWVPTNTGRYLLTFATLDEAYLYIIRFGGGLEVVPNTYENF