Scaffold Ga0209224_1009571

Overview

Basic Information

• Taxon OID: 3300025371
• Scaffold ID: Ga0209224_1009571
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1668
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209224_10095712	F076263	N/A	MLSAEDLSAILDDLEDLCARLPEGVTFHPTLEIHRHYASEEATYIKFDCRNHRYILTIVRTGIAKTTRVSSREELFRRLFPEYSPGYSEEIWGGE
Ga0209224_10095713	F080247	N/A	LIDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKTTPGGETIQVCVPIDATFIAYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0209224_10095714	F061983	AGGAGG	LKKYVFKVKVVPVKIFNDDGVLSEQEFEQVKKTGVYKGLKVLEIKDLGLDNFWRFMHYYELVAVSEGGGQFDCYYGDVIDVEKLKGVGAIVVKDGDAPPVRTMKTLVAKWYNKKLVEEEKAYEVCNTLVT