Scaffold Ga0209224_1000756

Overview

Basic Information

• Taxon OID: 3300025371
• Scaffold ID: Ga0209224_1000756
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7386
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099548	Metagenome	103	Y
F101501	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209224_10007566	F099548	AGGGGG	MQSDLPWNVRRVVARLIVIAIKGAPGSCISITPGLLGKVLGDGAVREALRLLRAMSLHGILDRVNGAYTLCSTDNPELWVTVKRLPIDEAVAWLLWLIEDASDGKAIGNGPSYEL
Ga0209224_10007569	F101501	GGA	MERIIWENVDAIRGIVKRAFNGEYLGYNLDPIPFIRIRVKDGVIEVPITNQAFKPILEKAYKTLDDYEKRRLLAYEVGGAFKVHPYYIQLLILDVIQLSQLLNIRDVNTLVKTLLEHPLSSERATLLGRQGVELLLHRMIEVGLLAMPSP