Scaffold Ga0209224_1000020

Overview

Basic Information

• Taxon OID: 3300025371
• Scaffold ID: Ga0209224_1000020
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43199
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (47.30%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209224_100002039	F080245	N/A	MIFVWSARVIMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVIKLDDDLLKKLEETSIEDLNYPLNTISHVFT
Ga0209224_100002040	F087442	GAGG	MMREGLVKAGNLVVDCKPCYIAGTGFVKDDVYVVSEGTVVFKWYDKIALITVNEEGTKITLLDIIDVRFLVERNENCLVTKL
Ga0209224_100002042	F076263	N/A	MVSLEDLSAVLDDLEDLCARLPEGVTFHPTLELRRNYANEEATYIKFDCRNHRYVLTIVREGVAKTTRLSSREEMFRRLFPDYMGEGII
Ga0209224_100002043	F080247	N/A	MIVWGKLIECLLDTDVNYLNGELFSNPLRIKGKFLVFGNLYTFERAISETGTEQVCVPIDATFMAYYEGMVAIMSFYLKEREMYANISLTDPETIKGFVNMSSFYKKYGISIPNLLDKIMYRKVPT
Ga0209224_100002044	F061983	AGGAGG	LKKFMIKVTVVPINLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVRKWMHFYTITAVSEGGGLLDCYYGDTINVEKLKNVGAIVIGDKDTQPVKTMKTLVAKWYNKQLVYEEKAYEICNKFVT
Ga0209224_100002046	F085905	GGAGG	LSFPSSRLSQFDYVAMNAYWLNARLKYFTDPLLYALATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQSIMKSLVDFMNDKLKILDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDAESVFQGIVAGHLLPFGVLETIRRYAKR
Ga0209224_100002047	F063848	N/A	VAKKRRSVHDPVLSVIHYQEQLEKMAKAYEKSATRRNQRAVNGFSILKQVQETVRDYLNQASEAMKKPIIAQLGVEFLGVAMAYLKASNEGFSSYALTGRVAQIATLKATGVVNGTELTCAQVGEIINGMLKKVSGMTADPLTFTENDGICEATPANPMPKLSIASPSTGYTVSMNDILKAKSPEEVLMGK
Ga0209224_100002050	F087445	AGG	MSDYELKRIFRMIPIEKRLMLALDTIQEYQSIQAKFNSLLDGLAMNAPRVREVVESAKKNRKPIDRLADMFMDMMETMLKSKAMSLTDEDRAKLKEKLKQVMESEE
Ga0209224_100002052	F076264	AGGCGG	MSSISSAIQSMVNGLQNLFTAIVNVFGCAINAIGNTLSSLAQPIGYLIGVLSVFGSLIAIIWYVFRGRGGIGGLVGSIRNFFTSFF
Ga0209224_100002062	F070317	GGA	MSNLEELKELNLEKTYKDAQEGEVCTVNKIYKGKLIDIISLIKDPATLSQKAMEFIQRRGNDVFYVFQCTTREGREVKLLVRQSFDPKSTFYGLMKKYKTIKVGDEINVFYNPEKRRYDFVL
Ga0209224_100002063	F077502	N/A	MTDVAHIVLWVEQKLPEEAKLSELIDNIFSLITEIILNNLSQGKQPITFQTVQQVANAFKEMIYKSIEQSIGTLTDEVKSQVDAEFFKRLSSIYDKYYK
Ga0209224_100002065	F077499	GAG	MADLFIFPQESLKPINYPKITNAEIIFILTISVPIGQHPNDDVPADDKLRFLETYMPLEFQKLQYMKTIDKALEILKYSLYSRESNVLVEIAEKINDTYNVKKLTEKIIDAECVKDITTIKVTLTEAKRRIYPDISLSKYVSANAKQLNMRKSEYYSRLFQCYIEQDNELNMLTLYRVSNIVFNFIRLNNLSHLIKNMKFKNEKIERLAEKIKQRVNITLEAMAEKRIAQTDENLLNSITIRIKEIDLG
Ga0209224_100002066	F056742	N/A	LKLADCRYKCKQTYFRKSIFVKMFAKEVEKTYGVKLKTCEDFCKFYVLFLSVAEMLYGKHYNYGIFKAIVRGKPNLYMCVKCNQPFTAEESITHTLQHMKTLGYKPLAYKEEI