Scaffold Ga0209224_1000001

Overview

Basic Information

• Taxon OID: 3300025371
• Scaffold ID: Ga0209224_1000001
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102872
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (43.66%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035135	Metagenome / Metatranscriptome	173	Y
F071411	Metagenome / Metatranscriptome	122	Y
F083831	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209224_1000001121	F071411	N/A	MSEDDDRMLDILINSADNRTELEKHMDYIAKLLKDNLQDVIDNAIDVQLYVSLPSKEPVGFDIGITIGGPNIRLIYSRGACKLQGAWGFQTDEKYIDNEICETILDYLTQA
Ga0209224_1000001134	F035135	N/A	MTYVNEKFTTPLHPKRKILLPRSIYDQQQFITSFFFDVVDNDEYEYIIFTFLMKNAFKIYLNVWREQRKFINYLKTFKDEFKNAYDYYQRLLITTKQRIYDTTHAIACFFTFDDDIKEILTIYVNELFCNYVNDALC
Ga0209224_1000001138	F083831	N/A	MMYKVEKIEVIRNKIFCTISNKYETLNSVPIENLKLARKNNKLYAKLKV