Scaffold Ga0208382_1035314

Overview

Basic Information

• Taxon OID: 3300025369
• Scaffold ID: Ga0208382_1035314
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 609
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. MG-27-Goln-C1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069626	Metagenome	123	Y
F070862	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208382_10353142	F070862	GGAGG	MKKYFVVFTEESTKDHGYYVEAENKTQAYLKAEEKYFEHEEADSVSTGYAKTLGYEVVDV
Ga0208382_10353143	F069626	AGGAG	VDRHSMVKRLIADDITTIKIGFEQGDAEYLYDILMSGIGYDKQTLREIIDEYNSRTWEES