NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208382_1010065

Scaffold Ga0208382_1010065


Overview

Basic Information
Taxon OID3300025369 Open in IMG/M
Scaffold IDGa0208382_1010065 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1518
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026798Metagenome / Metatranscriptome196N
F038078Metagenome / Metatranscriptome166N
F043767Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0208382_10100651F038078N/AMAEKYEKSTVEMKKSKRKSIERFFSLINFIFFMSEEEDITLLRYLHEAKTKVLANSEYWSLVDYTGMTIGRIFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYNTTCPCSQCSTEEGKEDTISSSISKLNI
Ga0208382_10100652F043767N/AMENQEQGESNGHSLFFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEIEPDS
Ga0208382_10100653F026798N/AMNKSKEKSISHNCTEINLKSKKGNDANTDKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKMVNSLDVKQNFQDMNNQLKLQMLFNTVLKLKRLYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYKLMKVQENP
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