Scaffold Ga0208382_1005883

Overview

Basic Information

• Taxon OID: 3300025369
• Scaffold ID: Ga0208382_1005883
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2303
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008745	Metagenome / Metatranscriptome	328	N
F028153	Metagenome / Metatranscriptome	192	N
F040465	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208382_10058832	F028153	N/A	MEVDECGTGARWPPNCEITEEELCFVRRLVNCRSFPTKKRLDDWLRIMEEVVKVLGIVYRSSFRLLETNNFKDESILDLLRTVYISAMAEVDVVKGERT
Ga0208382_10058834	F008745	GGA	MSNGYQITEEERDTLVCPRLECMGAQELLDVWLLPLVLEVGGILEEAYRTSHQLFERGQGEERILGLLQHKLMTAIDELDVVKGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE
Ga0208382_10058835	F040465	N/A	MSDEEVDECAQWPEITEEELSYAQDIWNREPSPDEERLDDWLLVMEEIVGIIGYTYHSTFQLLESKNVNNNCLLEALRALYIFAMAEVNVAKRKRTSS