NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208382_1001116

Scaffold Ga0208382_1001116


Overview

Basic Information
Taxon OID3300025369 Open in IMG/M
Scaffold IDGa0208382_1001116 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7801
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F027396Metagenome194Y
F029972Metagenome186Y
F052345Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0208382_100111613F021233GGAMSSNSGLRRGLDSLTEPEMDAPHDDKFGDLHRFVVRSFRWEGKPEEKEMLESIEQVVDNFIDEYIHPAEVIIARFNTDSGLTGAEGDRLFLNLQSAIVAIEEEVTRRYLKAQFSYYMLDDKYNAAYVKHAKGTTNDLNARARMETRDDRLFYFVQYSAWRIINDKVNSLKATQRHIQNQLYRRGNGGQYS
Ga0208382_100111614F027396AGGVGNTPRKSRKQEVIRGKMTWQILERLLNNYWEWQEVYRTTGNPELQLLNGVTVNIYDILKGIDKLPPRQKQAVVLSCLENRKEVEVARIMGFTKWSSQVGMYKRKALQQLCNTIWANEND
Ga0208382_100111616F052345GGAGMDRRTREYKDLVKMTPTTEDLLSEEIDGELFLYKSSPLCKVCNTSDDLKNIIDSLLLFPKSYKEVLLAIQPLQDKLGLTESERINYENIRNHQKNHLPFEKKLVRDIVEKRAREKNRSILDAGERLLTAEAFYEVIVAKGWEDIAQGYEKPTLTQTMHAMEMLQKLEKEGQDNYRPEDLINQLDIILLAIRDVLPPAMKEELFLKIEEYQNGNVTSKAKKIKPAEIEAEYIDEDFLEE
Ga0208382_10011168F029972GAGMGKYQQRFSQRQERELEEQWPLAKRTVGSGNKWEKGDLSTQEQHMVEFVIEAKATQAASFSITKKIWDAIKGHAQDRSWLARPILAVRLYGATEQEAAWGGTISHTPETLPVELDLICMDKDDFLELYYDYIRLKEKDASNNAN
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