Scaffold Ga0208382_1000162

Overview

Basic Information

• Taxon OID: 3300025369
• Scaffold ID: Ga0208382_1000162
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24392
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007405	Metagenome	351	Y
F012448	Metagenome / Metatranscriptome	280	Y
F034419	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208382_100016212	F034419	GAG	MYNEGRALVNEVSKTVGEVKKITKEVKGVWGWISKLFAEPEKKELEDIRPVKTEKVKTKATFDEKAIYAEIGDQLVSFFKNYKACADAIRTEEERIEKIYDPDGETYERSIRLVIAKTQLDQMGQELTDYMIYHVPAELKDLYSRVNEMIGTVKVKQELARKTELRRKAQREAQAREAADRAWLMGACTVAVIFVSIYMAGLMWAINRVSHGGM
Ga0208382_100016215	F007405	GGA	MVQGISPQHVFTYESAQLNVFHANKGEGLPRHEHSYAHATICHNGSCLVSLEGRSYTIDKNSQPLNLLEGEWHEIEALEDNTVFVNVFAEGKY
Ga0208382_10001625	F012448	GAG	MDIKEIEANPKYRRVEPEFVEFIEVDDIWARVYTVAKAETIISQHVHTHDHITLVCTGTVEAWQDGESLGQFEAPGIIRIPKGKKHAFKALTDNVSLCCLHNLRGTGLESPEIVEGV