Scaffold Ga0208382_1000075

Overview

Basic Information

• Taxon OID: 3300025369
• Scaffold ID: Ga0208382_1000075
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35140
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051643	Metagenome / Metatranscriptome	143	N
F057846	Metagenome	135	N
F076788	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208382_100007541	F076788	AGAAGG	MPLIQLPNNQSAVIAGREEITERTSRAISRAYMEAAATAAKLASLGFDDTDPTTWSAFAALTEEDQQALNGYQAQLIVGLVKQWTIGELPTLETALDLPKATFDALASACGDEFNGSTISTEPAIDPKAPTSDSQN
Ga0208382_100007544	F051643	GGCGG	VSRTTVREQFINYLNGAGITYLSEVKNFPAKFTPEGEFYEGQDPGHQQGCIVYPYIENQSEKRIELTGATGGGKEITYEVVFTCIFRSNKRKTEDAGVDAETFLDSFTNAIRASKNCGGPAVYNQPTAPIFQWGEGSTSGGTDIEVASYYPRQINGAASVTQVVSTVRVRIIEITPANTYLS
Ga0208382_10000756	F057846	N/A	MKNSDRMIRDRKMVEKAIARLTDGVMLDLVRRAGTRAVADATGQRGPRSKGSYSDPTAAAVIRRESAAVADPIFDAVRDISRLLDEMARMSMKLDDLVRFVQTGKERAREATTERCKSCDRIVECTPADRLRSGQCMACYQAQRRAKTQAK