Scaffold Ga0208620_1013370

Overview

Basic Information

• Taxon OID: 3300025368
• Scaffold ID: Ga0208620_1013370
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 965
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016247	Metagenome	248	Y
F036080	Metagenome / Metatranscriptome	170	Y
F051683	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208620_10133701	F036080	GAGG	MNPKVDLESAIMLAWQTSDDIDLLFKHYGDHPVPMSEDDVLNALLGIKSLHDMRCESLMDKYCQKMELNQYCTDPKQLEAREFLFGTKQPKKGSKKK
Ga0208620_10133702	F051683	AGGAG	MKLELDNDFTDEIIRSGLAESYVSVSSMMKNGDAWHEDDIASWEVLLPAIKIVGGWYSVNFDADIKKAKKRMNK
Ga0208620_10133704	F016247	N/A	DMNFIVEHRHKGNYVMETISGVEDIDTTVYEDLLGIWVCDSFEELQIMEKQLKEMRDARSSKSS